docs: update README to reflect current codebase state
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Rewrites the architecture section for the full current module tree and adds new sections for the REST API, swarm/agent mode, service bus, attacker intelligence stack (profiler, clustering, correlation, GeoIP/ASN), MazeNET topology, canary tokens, and TTP tagging/export. Updates the CLI reference table, test count (478 → 5050), and Python version constraints.
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